meshHyperGTest {meshr} | R Documentation |
Given a MeSHHyperGParams
object
containing a set of selected and background gene IDs,
and gene-MeSH annotation data of interest, meshHyperGTest
performs Hypergeomtric test for over-representation of each MeSH term
accouting for the multiple testing correction.
p |
A |
For details on creating MeSHHyperGParams
object, please read
the documentation in the MeSHHyperGParams-class.
A MeSHHyperGResult
object.
Gota Morota, Koki Tsuyuzaki, Takeru Nakazato, Itoshi Nikaido
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
meshr-package
, MeSHHyperGParams-class
,
MeSHHyperGResult-class
data(geneid.cummeRbund) data(sig.geneid.cummeRbund) meshParams <- new("MeSHHyperGParams", geneIds=sig.geneid.cummeRbund[,2], universeGeneIds=geneid.cummeRbund[,2], annotation="MeSH.Hsa.eg.db", category="Z", database="gene2pubmed", pvalueCutoff=0.05, pAdjust="none") meshR <- meshHyperGTest(meshParams)