loci2pathResult-class {loci2path} | R Documentation |
loci2pathResult Class contains information for the query result from
query function query
. Result object contains a ranked
pathway table, and a vector of gene names that are associated with loci
covered by query regions
resultTable(x) coveredGene(x) ## S4 method for signature 'loci2pathResult' resultTable(x) ## S4 method for signature 'loci2pathResult' coveredGene(x)
x |
An geneSet object |
Object of CLass loci2pathResult
resultTable
data.frame; contains enrichment statistics, summary of eQTL and gene numbers, pathway names and gene names, etc.
coveredGene
list; each member is a vector of genes associated with one tissue, whose associating loci are covered by query regions
result <- query(query.gr=query.gr, loci=eset.list, path=biocarta) result resultTable(result) # a data.frame for enriched pathways coveredGene(result)