getTissueDegree {loci2path} | R Documentation |
This function extracts the tissue degree from eQTL list query result for each pathway.
getTissueDegree(res, ...) ## S4 method for signature 'loci2pathResult' getTissueDegree(res, loci)
res |
query result from function query.egset.list() |
... |
additional params |
loci |
a list of eqtlSet; each member should be an eqtlSet object |
gene.tissue.map |
shows mapping:gene<->tissue |
gene.tissue.degree |
shows tissue degree for each gene |
mean.tissue.degree |
shows the average tissue digree for each pathway in the result table |
result <- query(query.gr=query.gr, loci=eset.list, path=biocarta) tissue.degree=getTissueDegree(result, eset.list) head(tissue.degree$gene.tissue.map) head(tissue.degree$gene.tissue.degree) head(tissue.degree$mean.tissue.degree)