plot_deviation {iCOBRA} | R Documentation |
Plot the deviations between observed scores and the continuous truth variable.
plot_deviation(cobraplot, title = "", stripsize = 15, titlecol = "black", xaxisrange = NULL, plottype = "boxplot", dojitter = TRUE, transf = "raw")
cobraplot |
A |
title |
A character string giving the title of the plot. |
stripsize |
A numeric value giving the size of the strip text, when the results are stratified by an annotation. |
titlecol |
A character string giving the color of the title. |
xaxisrange |
A numeric vector with two elements, giving the lower and upper boundary of the x-axis, respectively. |
plottype |
Either "boxplot" or "violinplot", indicating what type of plot to make. |
dojitter |
A logical indicating whether to include jittered data points or not. |
transf |
A character indicating the transformation to apply to the deviations before plotting. Must be one of "raw", "absolute" or "squared" |
A ggplot object
Charlotte Soneson
data(cobradata_example) cobraperf <- calculate_performance(cobradata_example, cont_truth = "logFC", aspects = "deviation") cobraplot <- prepare_data_for_plot(cobraperf, colorscheme = "Dark2", incltruth = TRUE) plot_deviation(cobraplot)