FreqPlot {focalCall} | R Documentation |
Frequency plot of all aberrations in the dataset.
FreqPlot(calls, header)
calls |
Object of class |
header |
String with header name of frequencyPlot. |
FreqPlot is applied to the calls of an object of class cghCall
(as returned by focalCall).
A single plot is returned with the frequency of aberrations in the complete dataset. The x-axis represents the chromosomes, the y-axis the percentage of samples with a gain or loss at that genomic position.
Oscar Krijgsman: o.krijgsman@vumc.nl
Krijgsman O., Benner C., Meijer G.A., Van de Wiel, M.A., Ylstra, B. (2013), "FocalCall: an R-package to detect genomic focal aberrations.", Submitted
focalCall
, CGHcall
# Load example data data(BierkensCNA) # generate frequency plot of copy number data FreqPlot(calls_focals, "FrequencyPlot_BierkensSamples")