epivizChart {epivizrChart} | R Documentation |
EpivizChart
object to visualize in viewer or knit to HTML.Initialize an EpivizChart
object to visualize in viewer or knit to HTML.
epivizChart(data_obj = NULL, measurements = NULL, datasource_name = NULL, parent = NULL, chart = NULL, chr = NULL, start = NULL, end = NULL, settings = NULL, colors = NULL, ...)
data_obj |
A data object that will register to an |
measurements |
An |
datasource_name |
A name for the datasource. For example, "Mean by Sample Type". |
parent |
An object of class |
chart |
The chart type to be visualized: "BlocksTrack", HeatmapPlot", "LinePlot", "LineTrack", "ScatterPlot", "StackedLinePlot", "StackedLineTrack". |
chr |
The chromosome to filter on, e.g., chr="chr11". |
start |
The start location, e.g., start=110800000. |
end |
The end location, e.g., end=130383180. |
settings |
List of settings, e.g., list(title="Blocks Chart"). |
colors |
List of colors. When chart is rendered to html this will be converted to a string encoded as JSON |
... |
Additional arguments passed to |
An object of class EpivizChart
.
data(tcga_colon_blocks) start <- 99800000 end <- 103383180 blocks_track <- epivizChart(tcga_colon_blocks, chr="chr11", start=start, end=end) # See package vignette for more examples.