samscreen {epiNEM}R Documentation

Example data: epiNEM results for the Sameith et al., 2015 knock-out screen The result of the epiNEM analysis of the data from "http://www.holstegelab.nl/publications/ sv/signaling_redundancy/downloads/DataS1.txt". The data consists of a list of matrices with the likelihoods (ll) for each analysed triple of signalling genes and the inferred logic (logic) for each triple. The signalling genes or modulators C are the rows and the signalling genes from the double knock-downs are in the columns. For details see the vignette.

Description

Example data: epiNEM results for the Sameith et al., 2015 knock-out screen The result of the epiNEM analysis of the data from "http://www.holstegelab.nl/publications/ sv/signaling_redundancy/downloads/DataS1.txt". The data consists of a list of matrices with the likelihoods (ll) for each analysed triple of signalling genes and the inferred logic (logic) for each triple. The signalling genes or modulators C are the rows and the signalling genes from the double knock-downs are in the columns. For details see the vignette.

Examples

data(samscreen)

[Package epiNEM version 1.4.0 Index]