ContigOrdering-class {contiBAIT}R Documentation

A class for storing contig ordering of a linkage group

Description

This class is a matrix of two character vectors that represent the calculated ordering of a linkage group. The first element of this matrix is the Linkage Group sub-setted by contigs with equal strand states across all libraries in the calculated order. The second element is the names of names of each contig in the calculated order.

Usage

ContigOrdering(ordering = character())

Arguments

ordering

a matrix of two character vectors that represent the calculated ordering of a linkage group. The first element of this matrix is the Linkage Group sub-setted by contigs with equal strand states across all libraries in the calculated order. The second element is the names of names of each contig in the calculated order.

Value

a ContigOrdering

Examples

thisOrdering <- ContigOrdering(matrix(ncol=2, c( "LG1.11", "chr2:1000820-2001640", 
			"LG1.1", "chr2:3002461-4003281")))

[Package contiBAIT version 1.8.0 Index]