CellBaseParam {cellbaseR} | R Documentation |
CellBaseParam object is used to control what results are returned from the CellBaseR methods
CellBaseParam(assembly = character(), feature = character(), region = character(), rsid = character(), accession = character(), type = character(), mode_inheritance_labels = character(), clinsig_labels = character(), alleleOrigin = character(), consistency_labels = character(), so = character(), source = character(), trait = character(), include = character(), exclude = character(), limit = character())
assembly |
A character the assembly build to query, e.g.GRCh37(default) |
feature |
A character vector denoting the feature/s to be queried |
region |
A character vector denoting the region/s to be queried must be in the form 1:100000-1500000 |
rsid |
A character vector denoting the rs ids to be queried |
accession |
A caharcter vector of Cinvar accessions |
type |
A caharcter vector of Variant types |
mode_inheritance_labels |
A character vector |
clinsig_labels |
A character vector |
alleleOrigin |
A character vector |
consistency_labels |
A character vector |
so |
A character vector denoting sequence ontology to be queried |
source |
A character vector |
trait |
A character vector denoting the trait to be queried |
include |
A character vector denoting the fields to be returned |
exclude |
A character vector denoting the fields to be excluded |
limit |
A number limiting the number of results to be returned |
an object of class CellBaseParam
https://github.com/opencb/cellbase/wiki and the RESTful API documentation http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/
cbParam <- CellBaseParam(assembly="GRCh38",feature=c("TP73","TET1")) print(cbParam)