getGenProfs {canceR}R Documentation

Get Genetic Profile from selected Studies

Description

Get Genetic Profile from selected Studies

Usage

getGenProfs()

Value

dataframe with genetic profil

Examples

cgds<-CGDS("http://www.cbioportal.org/public-portal/")
# Get list of cancer studies at server
Studies <- getCancerStudies(cgds)[,2]
# Get available case lists (collection of samples) for a given cancer study
mycancerstudy <- getCancerStudies(cgds)[2,1]
mycaselist <- getCaseLists(cgds,mycancerstudy)[1,1]
# Get available genetic profiles
mygeneticprofile <- getGeneticProfiles(cgds,mycancerstudy)[4,1]
## Not run: 
getGenProfs()

## End(Not run)

[Package canceR version 1.14.0 Index]