getPotentialSwaps {birte} | R Documentation |
birteRun
.
Calculates for TF-/miRNA-target graph all potential swap partner.
getPotentialSwaps(genesets, perc.overlap.cutoff=0.8, integer.id=TRUE)
genesets |
Each entry corresponds to a regulator (miRNA, TF, other) and contains its target genes. |
perc.overlap.cutoff |
Percentage cutoff of minimal overlap between two miRNAs or TFs to be possible swap partner. |
integer.id |
If TRUE, the swap partner are not output as characters, but as integer indices. |
A list object, where each element corresponds to one regulator.
Holger Froehlich
# artificial data data(humanNetworkSimul) genesets = c(sapply(affinities2$TF, names), sapply(affinities2$miRNA, names), sapply(affinities2$other, names)) swaps = getPotentialSwaps(genesets)