normalization {anamiR} | R Documentation |
This function will normalize the given expression data and return it in the same data format.
normalization(data, method = c("quantile", "normal", "rank.invariant"))
data |
expression data in matrix format, with sample name in columns and gene symbol or miRNA name in rows. |
method |
normalization methods, including "quantile", "normal", "rank.invariant". Default is "quantile". As for method "normal", we trim the extreme value and calculate the mean in the data. |
SummarizedExperiment
for return object.
normalizeQuantiles
for quantile normalization;
rankinvariant
for rank invariant normalization.
## Use the internal dataset data("mirna", package = "anamiR", envir = environment()) ## Normalize miRNA expression data normalization(data = mirna, method = "quantile")