parse_vcf_file {Uniquorn}R Documentation

Filter Parsed VCF Files

Description

Intern utility function. Filters the parsed VCF file for all informations except for the start and length of variations/mutations.

Usage

parse_vcf_file(
    vcf_file,
    ref_gen,
    library_name
)

Arguments

vcf_file

character string giving the path to the vcf file on the operating system.

ref_gen

Reference genome version

library_name

Name of the reference library

Value

Loci-based DNA-mutational fingerprint of the cancer cell line as found in the input VCF file.


[Package Uniquorn version 2.0.0 Index]