tagCountTSS {TSRchitect}R Documentation

tagCountTSS

Description

an internal function that returns a matrix [a, h] where a = the number of unique TSSs and h = the # of tags observed at that position. tagCountTSS is invoked via prcTSS.

Usage

tagCountTSS(y, n.cores = 1, outfname = "TSS.txt", writeTable = FALSE)

Arguments

y

a data frame containing the contents of a single slot of tssTagData.

n.cores

the number of cores to be used for this job.

outfname

the prefix of the file name of TSS information to be written. (character)

writeTable

if TRUE, the tag count information is written to a file in the workding directory (logical)

Value

a matrix [a, h] containing the number of unique TSSs (a) and their corresponding abundances (h) is returned.


[Package TSRchitect version 1.8.9 Index]