tpp2dMerge2dRef {TPP} | R Documentation |
Merges 2D-TPP result data with TPP-TR reference data to generate a big table including both results
tpp2dMerge2dRef(resultTable_2D, referenceDataSummary, refIDVar = "Protein_ID", idVar = NULL, data = NULL, trRef = NULL)
resultTable_2D |
dataframe containing the 2D-TPP results |
referenceDataSummary |
summarized reference data results. See details. |
refIDVar |
character string indicating name of the columns containing the unique protein identifiers in the reference data set |
idVar |
DEPRECATED |
data |
DEPRECATED |
trRef |
DEPRECATED |
referenceSummary
contains summary statistics like median
fold changes and is produced by the function
tpp2dCreateTPPTRreference
. It summarizes the results of a
TPP-TR analysis of a reference data set.
A reference data set is the a output of a TR experiment without drug
treatment on the same cell line as resultTable_2D.
A data frame with results merged from 2D-TPP and TPP-TR reference
data(panobinostat_2DTPP_smallExample) config_tpp2d <- panobinostat_2DTPP_config data_tpp2d <- panobinostat_2DTPP_data tpp2dResults <- analyze2DTPP(configTable = config_tpp2d, data = data_tpp2d, methods=c("doseResponse"), createReport="none", nCores=1, idVar = "representative", addCol = "clustername", intensityStr = "sumionarea_protein_", nonZeroCols = "qusm") trRef <- file.path(system.file("data", package="TPP"), "TPPTR_reference_results_HepG2.RData") annotatedTable <- tpp2dMerge2dRef(resultTable_2D = tpp2dResults, referenceDataSummary = trRef)