tpp2dExport {TPP} | R Documentation |
Produce Excel table of 2D-TPP experiment analysis results.
tpp2dExport(configTable = NULL, tab, resultPath = NULL, idVar = NULL, fcStr = NULL, intensityStr = NULL, outPath, addCol = NULL, normalizedData = NULL, trRef = NULL, addPlotColumns = TRUE)
configTable |
DEPRECATED |
tab |
Table with results of the 2D-TPP analysis. |
resultPath |
DEPRECATED |
idVar |
DEPRECATED |
fcStr |
DEPRECATED |
intensityStr |
DEPRECATED |
outPath |
path for storing results table |
addCol |
additional names of columns which are to be attached to the result table |
normalizedData |
DEPRECATED |
trRef |
character string containing a valid system path to a TPP-TR reference RData file |
addPlotColumns |
boolean variable indicating whether paths to plot files should be generated and checked for validity. De-activate if no dose-response curve plots were produced during the analysis. |
Creates excel file of the TPP-CCR analysis of the 2D-TPP data.
data(panobinostat_2DTPP_smallExample) load(system.file("example_data/2D_example_data/shortData2d.RData", package="TPP")) # tpp2dExport(configTable = panobinostat_2DTPP_config, tab=shortData2d, # outPath=getwd(), # idVar="representative", fcStr="norm_rel_fc_protein_", # intensityStr="sumionarea_protein_", addCol=NULL) data(panobinostat_2DTPP_smallExample) # cfgRaw <- panobinostat_2DTPP_config # datRaw <- panobinostat_2DTPP_data # datIn <- tpp2dImport(cfgIn, datRaw, fcStr = NULL) # datFC <- tpp2dComputeFoldChanges(data = datIn) # datNorm <- tpp2dNormalize(data = datFC) # cfgCCR <- convert_2D_cfgTable_to_CCR_cfgTable(cfgIn) # datFitted <- tpp2dCurveFit(datNorm, nCores = 2) # tpp2dCreateReport(getwd(), cfgIn, resultTable = datFitted, idVar = "representative", # intensityStr = "sumionarea_protein_") # tpp2dExport(tab = datFitted, outPath = getwd(), addPlotColumns = FALSE)