tppQCPlotsCorrelateExperiments {TPP} | R Documentation |
Plot pairwise relationships between the proteins in different TPP experiments.
tppQCPlotsCorrelateExperiments(tppData, annotStr = "", path = NULL, ggplotTheme = tppDefaultTheme())
tppData |
List of expressionSets with data to be plotted. |
annotStr |
String with additional information to be added to the plot. |
path |
Location where to store resulting plot. |
ggplotTheme |
ggplot theme for the created plots. |
List of plots for each experiment.
data(hdacTR_smallExample) tpptrData <- tpptrImport(configTable=hdacTR_config, data=hdacTR_data) # Quality control (QC) plots BEFORE normalization: tppQCPlotsCorrelateExperiments(tppData=tpptrData, annotStr="Non-normalized Fold Changes") # Quality control (QC) plots AFTER normalization: tpptrNorm <- tpptrNormalize(data=tpptrData, normReqs=tpptrDefaultNormReqs()) tpptrDataNormalized <- tpptrNorm$normData tppQCPlotsCorrelateExperiments(tppData=tpptrDataNormalized, annotStr="Normalized Fold Changes")