get_time_series_df_bio {TMixClust} | R Documentation |
get_time_series_df_bio
creates a data frame with time
series data from a Bioconductor Biobase ExpressionSet object.
get_time_series_df_bio(bio_obj)
bio_obj |
Bioconductor Biobase ExpressionSet object. The assayData has to contain a matrix where each row is a gene time series and each column contains the time series values at each time point. The number of columns is equal to the number of time points, while the number of rows is equal to the number of genes. |
A data frame containing the time series
Monica Golumbeanu, monica.golumbeanu@bsse.ethz.ch
Golumbeanu M, Desfarges S, Hernandez C, Quadroni M, Rato S, Mohammadi P, Telenti A, Beerenwinkel N, Ciuffi A. (2017) Dynamics of Proteo-Transcriptomic Response to HIV-1 Infection.
# Load the SOS pathway data from Bioconductor package SPEM library(SPEM) data(sos) sos_data = get_time_series_df_bio(sos) # Print the first lines of the retrieved time series data frame print(head(sos_data))