matrix_plot {StarBioTrek} | R Documentation |
GE_matrix creates a matrix of mean gene expression for pathways given by the user.
matrix_plot(DataMatrix, pathway)
DataMatrix |
gene expression matrix (eg.TCGA data) |
pathway |
pathway data as provided by getKEGGdata |
a matrix for each pathway (mean gene expression level belong to that pathway)
list_path_plot<-matrix_plot(DataMatrix=tumo[,1:2],pathway=path)