filter_all_peptides {SWATH2stats} | R Documentation |
This functions counts all proteins that are supported by peptides (including non proteo-typic peptides). All peptides (incl. non proteotypic peptides are selected. For the proteins supproted by proteotypic peptide the "1/" in front of the identifier is removed to facilitate further data processing.
filter_all_peptides(data)
data |
A data frame containing SWATH data. |
Returns a data frame with the data from both proteotypic and non-proteotypic peptides.
Peter Blattmann
data("OpenSWATH_data", package="SWATH2stats") data("Study_design", package="SWATH2stats") data <- sample_annotation(OpenSWATH_data, Study_design) data.filtered.decoy <- filter_mscore(data, 0.01) data.all <- filter_all_peptides(data.filtered.decoy)