windowGOvisualize {SEPA} | R Documentation |
Visualize results of GO analysis with moving window for transition patterns
windowGOvisualize(GOres, GOTerm = NULL, topterm = 2, mode = "Heatmap")
GOres |
The direct output of windowGOanalysis function. |
GOTerm |
The name of GO term to be displayed. If NULL, top GO terms will be displayed instead |
topterm |
The number of top GO terms to be displayed. This argument only works when GOTerm is NULL. |
mode |
To plot in heatmap or line graph. Either "Heatmap" or "Line". |
This function is specifically designed to visualize the results obtained from windowGOanalysis function. Users can choose to visualize specific GO terms or top GO terms in each time window
A ggplot2 object.
Zhicheng Ji, Hongkai Ji <zji4@zji4.edu>
library(topGO) data(HSMMdata) pattern <- pseudotimepattern(HSMMdata,pseudotime) windowGOvisualize(windowGOanalysis(pattern,type="constant_up"))