sc3_plot_silhouette {SC3} | R Documentation |
A silhouette is a quantitative measure of the diagonality of the consensus matrix. An average silhouette width (shown at the bottom left of the silhouette plot) varies from 0 to 1, where 1 represents a perfectly block-diagonal consensus matrix and 0 represents a situation where there is no block-diagonal structure. The best clustering is achieved when the average silhouette width is close to 1.
sc3_plot_silhouette.SingleCellExperiment(object, k) ## S4 method for signature 'SingleCellExperiment' sc3_plot_silhouette(object, k)
object |
an object of 'SingleCellExperiment' class |
k |
number of clusters |