dpval,RnBeadSet-method {RnBeads}R Documentation

dpval-methods

Description

Extract detection p-values from an object of RnBeadSet class.

Usage

## S4 method for signature 'RnBeadSet'
dpval(object, type = "sites", row.names = FALSE,
  i = NULL, j = NULL)

Arguments

object

RnBeadSet or RnBeadRawSet object

type

character singleton. If sites detection p-values per each available site is returned. Otherwise should be one of region types for for which the summarized p-values are available

row.names

Flag indicating of row names are to be generated in the result.

i

Indices of sites/regions to be retrieved. By default (NULL), all will be retrieved.

j

Indices of samples to be retrieved. By default (NULL), all will be retrieved.

Value

detection p-values available for the dataset in the form of a matrix.

Examples


library(RnBeads.hg19)
data(small.example.object)
dp<-dpval(rnb.set.example, row.names=TRUE)
head(dp)


[Package RnBeads version 1.12.1 Index]