rnb.plot.control.barplot {RnBeads} | R Documentation |
Per-sample bar plots of Illumina HumanMethylation control probes
rnb.plot.control.barplot(rnb.set, probe, sample.subset = 1:length(samples(rnb.set)), writeToFile = FALSE, numeric.names = FALSE, name.prefix = NULL, verbose = FALSE, ...)
rnb.set |
|
probe |
exact id of the control probe consisting of the control probe type (see |
sample.subset |
an integer vector specifying the subset of samples for which the plotting should be performed |
writeToFile |
flag specifying whether the output should be saved as |
numeric.names |
if |
name.prefix |
in case |
verbose |
if |
... |
other arguments to |
plot as an object of type ReportPlot
if writeToFile
is TRUE
and of class
ggplot
otherwise.
Pavlo Lutsik
library(RnBeads.hg19) data(small.example.object) control.meta.data <- rnb.get.annotation("controls450") ctrl.probe<-paste0(unique(control.meta.data[["Target"]])[4], ".3") print(ctrl.probe) # EXTENSION.3 rnb.plot.control.barplot(rnb.set.example, ctrl.probe)