rnb.execute.quality {RnBeads} | R Documentation |
Performs quality control calculations on the loaded DNA methylation data set.
rnb.execute.quality(object, type = "sites", qc.coverage.plots = rnb.getOption("qc.coverage.plots"), verbose = TRUE)
object |
Methylation dataset as an object of class |
type |
|
qc.coverage.plots |
Flag indicating if sequencing coverage information is summarized and returned. This
parameter is considered only when |
verbose |
Flag specifying whether diagnostic output should be written to the console or to the RnBeads logger in case the latter is initialized. |
Currently, summarizing coverage for RnBiseqSet
object is the only available function.
RnBeadSet
object with imputed quality control information
Pavlo Lutsik