addLogo {RcisTarget} | R Documentation |
Adds a column containing the logo URL to RcisTarget results table. Note that Transfac-Pro logos cannot be shown.
addLogo(motifEnrDT, addHTML = TRUE, dbVersion = "v9", motifCol = "motif")
motifEnrDT |
Results from RcisTarget (data.table) |
addHTML |
Whether to add the HTML tag <img> around the URL or not (boolean). |
dbVersion |
For current databases (mc9nr) use "v9" |
motifCol |
Name of the column which contains the logo ID. |
Returns the results table with a new column: 'logo'. This column contains either a URL with the logo image, or the HTML code to show the logo [e.g. with datatable()].
See the package vignette for more examples:
vignette("RcisTarget")
# Run the enrichment (or load previous results) load(paste(file.path(system.file('examples', package='RcisTarget')), "motifEnrichmentTable_wGenes.RData", sep="/")) # Add link to logo newMotifErnTable <- addLogo(motifEnrichmentTable_wGenes) # Show table library(DT) datatable(newMotifErnTable[,-c("enrichedGenes"), with=FALSE], escape = FALSE, filter="top", options=list(pageLength=5))