remprofile {REMP} | R Documentation |
remprofile
is used to extract profiled methylation of CpG sites in RE.
remprofile(methyDat, REtype = c("Alu", "L1"), RE = NULL, impute = TRUE, imputebyrow = TRUE, verbose = FALSE)
methyDat |
A |
REtype |
Type of RE. Currently |
RE |
A |
impute |
Parameter used by |
imputebyrow |
Parameter used by |
verbose |
Logical parameter. Should the function be verbose? |
A REMProduct
object containing profiled RE methylation results.
data(Alu.demo) GM12878_450k <- getGM12878('450k') remp.res <- remprofile(GM12878_450k, REtype = "Alu", RE = Alu.demo) details(remp.res) rempB(remp.res) # Methylation data (beta value) remp.res <- rempAggregate(remp.res) details(remp.res) rempB(remp.res) # Methylation data (beta value)