fetchRMSK {REMP} | R Documentation |
fetchRMSK
is used to obtain specified RE database from RepeatMasker Database
provided by AnnotationHub.
fetchRMSK(ah, REtype, verbose = FALSE)
ah |
An |
REtype |
Type of RE. Currently |
verbose |
Logical parameter. Should the function be verbose? |
A GRanges
object containing RE database. 'name' column
indicates the RE subfamily; 'score'
column indicates the SW score; 'Index' is an internal index for RE to facilitate data
referral, which is meaningless for external use.
ah <- AnnotationHub::AnnotationHub() L1 <- fetchRMSK(ah, 'L1', verbose = TRUE) L1