MSAroboticPlate-class {OSAT} | R Documentation |
"MSAroboticPlate"
A class store layout information of MSA robotic loader plate.
Class "gArray"
, directly.
signature(x = "data.frame", y =
"MSAroboticPlate")
: Return a data frame that assign samples
(represented by the input data frame) to MSA robotic plate sequentially.
signature(x = "gExperimentSetup", y =
"MSAroboticPlate")
: Return a data frame that assign samples from an
gExperimentSetup
object to MSA robotic plate.
signature(object = "MSAroboticPlate")
: Shows the
layout of the plate.
MSA4.plate
: A predeined object of class MSAroboticPlate
that represent a 96 position plate.
BeadChip96ToMSA4MAPMap
: The loading order a MSA4 robotic loader
used to load BeadChips.
library("OSAT") # data as an example inPath <- system.file("extdata", package="OSAT") pheno <- read.table(file.path(inPath, 'samples.txt'), header=TRUE, sep="\t") ## create object to hold sample information gs <- setup.sample(pheno, optimal=c("SampleType", "Race", "AgeGrp"), strata=c("SampleType") ) gs gc <- setup.container(IlluminaBeadChip96Plate, 6, batch='plates') gc gSetup <- create.optimized.setup(sample=gs, container=gc, nSim=100) out <- map.to.MSA(gSetup, MSA4.plate)