sampleClustering,RccSet-method {NanoStringQCPro}R Documentation

Clustering by sample correlation

Description

Clustering by sample correlation

Usage

## S4 method for signature 'RccSet'
sampleClustering(rccSet, outputFile,
  main = "Sample correlations in raw data", annCol = NULL,
  covar = "SampleType")

Arguments

rccSet

An RccSet

outputFile

Output PNG filename

main

Plot title

annCol

See aheatmap

covar

Covariate (e.g. "SampleType")

Value

A PNG file showing clustering of samples by correlation. Any zero-variance samples are omitted from the heatmap. The width and height of the PNG file are set to vary with the size of the input.

Author(s)

Dorothee Nickles, Robert Ziman


[Package NanoStringQCPro version 1.12.0 Index]