GSE6008 {MetaGxOvarian} | R Documentation |
Lysophosphatidic acid (LPA) governs a number of physiologic and pathophysiological processes. Malignant ascites fluid is rich in LPA, and LPA receptors are aberrantly expressed by ovarian cancer cells, implicating LPA in the initiation and progression of ovarian cancer. However, there is an absence of systematic data critically analyzing the transcriptional changes induced by LPA in ovarian cancer.In this study, gene expression profiling was used to examine LPA-mediated transcription by exogenously adding LPA to human epithelial ovarian cancer cells for 24 h to mimic long-term stimulation in the tumor microenvironment. The resultant transcriptional profile comprised a 39-gene signature that closely correlated to serous epithelial ovarian carcinoma. Hierarchical clustering of ovarian cancer patient specimens demonstrated that the signature is associated with worsened prognosis. Patients with LPA-signature-positive ovarian tumors have reduced disease-specific and progression-free survival times. They have a higher frequency of stage IIIc serous carcinoma and a greater proportion is deceased. Among the 39-gene signature, a group of seven genes associated with cell adhesion recapitulated the results. Out of those seven, claudin-1, an adhesion molecule and phenotypic epithelial marker, is the only independent biomarker of serous epithelial ovarian carcinoma. Knockdown of claudin-1 expression in ovarian cancer cells reduces LPA-mediated cellular adhesion, enhances suspended cells and reduces LPA-mediated migration.The data suggest that transcriptional events mediated by LPA in the tumor microenvironment influence tumor progression through modulation of cell adhesion molecules like claudin-1 and, for the first time, report an LPA-mediated expression signature in ovarian cancer that predicts a worse prognosis.
experimentData(eset): Experiment data Experimenter name: Murph MM, Liu W, Yu S, Lu Y, Hall H, Hennessy BT, Lahad J, Schaner M, Helland A, Kristensen G, Brresen-Dale AL, Mills GB. Lysophosphatidic acid-induced transcriptional profile represents serous epithelial ovarian carcinoma and worsened prognosis. PLoS One. 2009; 4(5):e5583. Laboratory: Murph, Mills 2009 Contact information: Title: Lysophosphatidic acid-induced transcriptional profile represents serous epithelial ovarian carcinoma and worsened prognosis. URL: PMIDs: 19440550 Abstract: A 247 word abstract is available. Use 'abstract' method. Information is available on: preprocessing notes: platform_title: [HG-U133A] Affymetrix Human Genome U133A Array platform_shorttitle: Affymetrix HG-U133A platform_summary: hgu133a platform_manufacturer: Affymetrix platform_distribution: commercial platform_accession: GPL96 version: 2015-09-22 20:07:11 featureData(eset): An object of class 'AnnotatedDataFrame' featureNames: 1007_s_at 1053_at ... AFFX-HUMISGF3A/M97935_MB_at (20967 total) varLabels: probeset gene EntrezGene.ID best_probe varMetadata: labelDescription
assayData: 20967 features, 103 samples Platform type: --------------------------- Available sample meta-data: --------------------------- alt_sample_name: Ovarian_Tumor_ClearCell_CHTN-OC-004 Ovarian_Tumor_ClearCell_CHTN-OC-012 1 1 Ovarian_Tumor_ClearCell_CHTN-OC-028 Ovarian_Tumor_ClearCell_KU-OC-003 1 1 Ovarian_Tumor_ClearCell_KU-OC-004 Ovarian_Tumor_ClearCell_KU-OC-005 1 1 Ovarian_Tumor_ClearCell_KU-OC-006 Ovarian_Tumor_ClearCell_KU-OC-007 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-005 Ovarian_Tumor_Endometrioid_CHTN-OE-011 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-014 Ovarian_Tumor_Endometrioid_CHTN-OE-017 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-018 Ovarian_Tumor_Endometrioid_CHTN-OE-019 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-023 Ovarian_Tumor_Endometrioid_CHTN-OE-029 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-033 Ovarian_Tumor_Endometrioid_CHTN-OE-035 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-036 Ovarian_Tumor_Endometrioid_CHTN-OE-038 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-039 Ovarian_Tumor_Endometrioid_CHTN-OE-040 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-042 Ovarian_Tumor_Endometrioid_CHTN-OE-046 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-047 Ovarian_Tumor_Endometrioid_CHTN-OE-048 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-053 Ovarian_Tumor_Endometrioid_CHTN-OE-054 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-056 Ovarian_Tumor_Endometrioid_CHTN-OE-059 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-060 Ovarian_Tumor_Endometrioid_CHTN-OE-061 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-065 Ovarian_Tumor_Endometrioid_CHTN-OE-069 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-076 Ovarian_Tumor_Endometrioid_CHTN-OE-077 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-080 Ovarian_Tumor_Endometrioid_CHTN-OE-082 1 1 Ovarian_Tumor_Endometrioid_CHTN-OE-087 Ovarian_Tumor_Endometrioid_CHTN-OE-092 1 1 Ovarian_Tumor_Endometrioid_JH-OE-2T Ovarian_Tumor_Endometrioid_KU-OE-003 1 1 Ovarian_Tumor_Endometrioid_KU-OE-004 Ovarian_Tumor_Endometrioid_KU-OE-007 1 1 Ovarian_Tumor_Endometrioid_UM-OE-1T Ovarian_Tumor_Mucinous_CHTN-OM-007 1 1 Ovarian_Tumor_Mucinous_CHTN-OM-017 Ovarian_Tumor_Mucinous_CHTN-OM-023 1 1 Ovarian_Tumor_Mucinous_CHTN-OM-029 Ovarian_Tumor_Mucinous_CHTN-OM-032 1 1 Ovarian_Tumor_Mucinous_CHTN-OM-035 Ovarian_Tumor_Mucinous_CHTN-OM-036 1 1 Ovarian_Tumor_Mucinous_KU-OM-003 Ovarian_Tumor_Mucinous_KU-OM-004 1 1 Ovarian_Tumor_Mucinous_KU-OM-006 Ovarian_Tumor_Mucinous_KU-OM-007 1 1 Ovarian_Tumor_Mucinous_UM-OM-01 Ovarian_Tumor_Mucinous_UM-OM-03 1 1 Ovarian_Tumor_Serous_CHTN-OS-002 Ovarian_Tumor_Serous_CHTN-OS-003 1 1 Ovarian_Tumor_Serous_CHTN-OS-009 Ovarian_Tumor_Serous_CHTN-OS-010 1 1 Ovarian_Tumor_Serous_CHTN-OS-011 Ovarian_Tumor_Serous_CHTN-OS-018 1 1 Ovarian_Tumor_Serous_CHTN-OS-020 Ovarian_Tumor_Serous_CHTN-OS-029 1 1 Ovarian_Tumor_Serous_CHTN-OS-038 Ovarian_Tumor_Serous_CHTN-OS-041 1 1 Ovarian_Tumor_Serous_CHTN-OS-044 Ovarian_Tumor_Serous_CHTN-OS-046 1 1 Ovarian_Tumor_Serous_CHTN-OS-048 Ovarian_Tumor_Serous_CHTN-OS-053 1 1 Ovarian_Tumor_Serous_CHTN-OS-055 Ovarian_Tumor_Serous_CHTN-OS-068 1 1 Ovarian_Tumor_Serous_CHTN-OS-072 Ovarian_Tumor_Serous_CHTN-OS-081 1 1 Ovarian_Tumor_Serous_CHTN-OS-089 Ovarian_Tumor_Serous_CHTN-OS-093 1 1 Ovarian_Tumor_Serous_CHTN-OS-098 Ovarian_Tumor_Serous_CU-OS-04 1 1 Ovarian_Tumor_Serous_CU-OS-05 Ovarian_Tumor_Serous_KU-OS-001 1 1 Ovarian_Tumor_Serous_KU-OS-002 Ovarian_Tumor_Serous_KU-OS-003 1 1 Ovarian_Tumor_Serous_KU-OS-005 Ovarian_Tumor_Serous_KU-OS-007 1 1 Ovarian_Tumor_Serous_KU-OS-009 Ovarian_Tumor_Serous_KU-OS-011 1 1 Ovarian_Tumor_Serous_KU-OS-012 Ovarian_Tumor_Serous_KU-OS-013 1 1 Ovarian_Tumor_Serous_KU-OS-015 Ovarian_Tumor_Serous_KU-OS-018 1 1 Ovarian_Tumor_Serous_KU-OS-021 Ovarian_Tumor_Serous_KU-OS-022 1 1 Ovarian_Tumor_Serous_UM-OS-02 Ovarian_Tumor_Serous_UM-OS-07 1 1 Ovarian_Tumor_Serous_UM-OS-09 Ovarian_Tumor_Serous_UM-OS-10 1 1 Ovarian_Tumor_Serous_UM-OS-11 (Other) 1 4 sample_type: healthy tumor 4 99 histological_type: clearcell endo mucinous ser NA's 8 37 13 41 4 primarysite: ov 103 summarygrade: high low NA's 38 36 29 summarystage: early late NA's 42 53 8 tumorstage: 1 2 3 4 NA's 35 11 44 9 4 substage: a b c d NA's 19 2 54 1 27 grade: 1 2 3 NA's 19 17 38 29 batch: 2002-04-03 2002-04-04 2002-04-09 2002-04-10 2002-04-12 2002-08-13 2002-08-15 3 8 9 2 3 4 4 2002-08-22 2002-08-23 2002-08-27 2002-08-28 2002-08-29 2002-08-30 2002-09-11 8 8 5 6 16 14 9 2006-01-27 4 uncurated_author_metadata: title: Ovarian_Tumor_ClearCell_CHTN-OC-004///geo_accession: GSM139377///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OC-004.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139377/GSM139377.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_ClearCell_CHTN-OC-012///geo_accession: GSM139378///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OC-012.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139378/GSM139378.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_ClearCell_CHTN-OC-028///geo_accession: GSM139379///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OC-028.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139379/GSM139379.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_ClearCell_KU-OC-003///geo_accession: GSM139380///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1a///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139380/GSM139380.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_ClearCell_KU-OC-004///geo_accession: GSM139381///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 2c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-004.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139381/GSM139381.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_ClearCell_KU-OC-005///geo_accession: GSM139382///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1a///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-005.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139382/GSM139382.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_ClearCell_KU-OC-006///geo_accession: GSM139383///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1a///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-006.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139383/GSM139383.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_ClearCell_KU-OC-007///geo_accession: GSM139384///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Clear_Cell///characteristics_ch1.1: stage: 1c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OC-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: clear cell///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139384/GSM139384.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-005///geo_accession: GSM139385///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-005.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139385/GSM139385.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-011///geo_accession: GSM139386///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-011.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139386/GSM139386.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-014///geo_accession: GSM139387///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-014.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139387/GSM139387.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-017///geo_accession: GSM139388///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-017.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139388/GSM139388.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-018///geo_accession: GSM139389///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: Y///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-018.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139389/GSM139389.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-019///geo_accession: GSM139390///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-019.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139390/GSM139390.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-023///geo_accession: GSM139391///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: Y///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-023.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139391/GSM139391.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-029///geo_accession: GSM139392///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1c///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-029.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139392/GSM139392.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-033///geo_accession: GSM139393///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-033.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139393/GSM139393.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-035///geo_accession: GSM139394///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-035.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139394/GSM139394.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-036///geo_accession: GSM139395///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-036.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139395/GSM139395.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-038///geo_accession: GSM139396///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-038.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139396/GSM139396.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-039///geo_accession: GSM139397///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-039.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139397/GSM139397.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-040///geo_accession: GSM139398///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-040.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139398/GSM139398.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-042///geo_accession: GSM139399///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-042.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139399/GSM139399.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-046///geo_accession: GSM139400///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-046.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139400/GSM139400.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-047///geo_accession: GSM139401///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2B///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-047.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139401/GSM139401.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-048///geo_accession: GSM139402///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-048.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139402/GSM139402.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-053///geo_accession: GSM139403///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-053.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139403/GSM139403.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-054///geo_accession: GSM139404///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-054.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139404/GSM139404.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-056///geo_accession: GSM139405///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-056.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139405/GSM139405.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-059///geo_accession: GSM139406///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-059.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139406/GSM139406.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-060///geo_accession: GSM139407///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-060.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139407/GSM139407.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-061///geo_accession: GSM139408///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-061.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139408/GSM139408.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-065///geo_accession: GSM139409///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 2A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-065.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139409/GSM139409.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-069///geo_accession: GSM139410///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-069.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139410/GSM139410.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-076///geo_accession: GSM139411///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-076.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139411/GSM139411.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-077///geo_accession: GSM139412///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-077.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139412/GSM139412.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-080///geo_accession: GSM139413///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-080.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139413/GSM139413.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-082///geo_accession: GSM139414///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-082.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139414/GSM139414.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-087///geo_accession: GSM139415///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: Y///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: Y///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: CHTN-OE-087.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139415/GSM139415.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_CHTN-OE-092///geo_accession: GSM139416///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: CHTN-OE-092.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139416/GSM139416.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_JH-OE-2T///geo_accession: GSM139417///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: JH-OE-2T.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139417/GSM139417.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_KU-OE-003///geo_accession: GSM139418///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: absent///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: KU-OE-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139418/GSM139418.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_KU-OE-004///geo_accession: GSM139419///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N///characteristics_ch1.4: CTNNB1_mutation: N///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: KU-OE-004.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139419/GSM139419.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_KU-OE-007///geo_accession: GSM139420///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: N///characteristics_ch1.10: TP53_mutation: Y///characteristics_ch1.11: P53_immunohistochemistry: present///characteristics_ch1.12: CEL_file_name: KU-OE-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139420/GSM139420.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Endometrioid_UM-OE-1T///geo_accession: GSM139421///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Endometrioid///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: Y///characteristics_ch1.4: CTNNB1_mutation: Y///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N///characteristics_ch1.7: PTEN_immunohistochemistry: present///characteristics_ch1.8: KRAS_mutation: N///characteristics_ch1.9: PIK3CA_mutation: Y///characteristics_ch1.10: TP53_mutation: N///characteristics_ch1.11: P53_immunohistochemistry: absent///characteristics_ch1.12: CEL_file_name: UM-OE-1T.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: endometrioid///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139421/GSM139421.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Mucinous_CHTN-OM-007///geo_accession: GSM139422///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 2C///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139422/GSM139422.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Mucinous_CHTN-OM-017///geo_accession: GSM139423///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-017.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139423/GSM139423.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Mucinous_CHTN-OM-023///geo_accession: GSM139424///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-023.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139424/GSM139424.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Mucinous_CHTN-OM-029///geo_accession: GSM139425///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-029.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139425/GSM139425.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Mucinous_CHTN-OM-032///geo_accession: GSM139426///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-032.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139426/GSM139426.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Mucinous_CHTN-OM-035///geo_accession: GSM139427///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-035.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139427/GSM139427.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Mucinous_CHTN-OM-036///geo_accession: GSM139428///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OM-036.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139428/GSM139428.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Mucinous_KU-OM-003///geo_accession: GSM139429///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: I c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OM-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139429/GSM139429.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Mucinous_KU-OM-004///geo_accession: GSM139430///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: I c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OM-004.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139430/GSM139430.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Mucinous_KU-OM-006///geo_accession: GSM139431///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: I a///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OM-006.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139431/GSM139431.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Mucinous_KU-OM-007///geo_accession: GSM139432///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: I c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OM-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139432/GSM139432.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Mucinous_UM-OM-01///geo_accession: GSM139433///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OM-01.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139433/GSM139433.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Mucinous_UM-OM-03///geo_accession: GSM139434///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Mucinous///characteristics_ch1.1: stage: 2a///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OM-03.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: mucinous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139434/GSM139434.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-002///geo_accession: GSM139435///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-002.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139435/GSM139435.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-003///geo_accession: GSM139436///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139436/GSM139436.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-009///geo_accession: GSM139437///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-009.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139437/GSM139437.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-010///geo_accession: GSM139438///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-010.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139438/GSM139438.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-011///geo_accession: GSM139439///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3B///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-011.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139439/GSM139439.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-018///geo_accession: GSM139440///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-018.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139440/GSM139440.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-020///geo_accession: GSM139441///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-020.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139441/GSM139441.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-029///geo_accession: GSM139442///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-029.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139442/GSM139442.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-038///geo_accession: GSM139443///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-038.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139443/GSM139443.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-041///geo_accession: GSM139444///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 1C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-041.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139444/GSM139444.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-044///geo_accession: GSM139445///status: Public 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Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139446/GSM139446.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-048///geo_accession: GSM139447///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: 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Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139447/GSM139447.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-053///geo_accession: GSM139448///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3D///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-053.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139448/GSM139448.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-055///geo_accession: GSM139449///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-055.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139449/GSM139449.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-068///geo_accession: GSM139450///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-068.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139450/GSM139450.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-072///geo_accession: GSM139451///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-072.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139451/GSM139451.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-081///geo_accession: GSM139452///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-081.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139452/GSM139452.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-089///geo_accession: GSM139453///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-089.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139453/GSM139453.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-093///geo_accession: GSM139454///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3C///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-093.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139454/GSM139454.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CHTN-OS-098///geo_accession: GSM139455///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 1A///characteristics_ch1.2: grade: 2///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CHTN-OS-098.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139455/GSM139455.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CU-OS-04///geo_accession: GSM139456///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CU-OS-04.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139456/GSM139456.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_CU-OS-05///geo_accession: GSM139457///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 2///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: CU-OS-05.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139457/GSM139457.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_KU-OS-001///geo_accession: GSM139458///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-001.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139458/GSM139458.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_KU-OS-002///geo_accession: GSM139459///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 4///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-002.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139459/GSM139459.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_KU-OS-003///geo_accession: GSM139460///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-003.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139460/GSM139460.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_KU-OS-005///geo_accession: GSM139461///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-005.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139461/GSM139461.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_KU-OS-007///geo_accession: GSM139462///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-007.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139462/GSM139462.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_KU-OS-009///geo_accession: GSM139463///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-009.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139463/GSM139463.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_KU-OS-011///geo_accession: GSM139464///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 1c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-011.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139464/GSM139464.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_KU-OS-012///geo_accession: GSM139465///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 2c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-012.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139465/GSM139465.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_KU-OS-013///geo_accession: GSM139466///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-013.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139466/GSM139466.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_KU-OS-015///geo_accession: GSM139467///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-015.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139467/GSM139467.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_KU-OS-018///geo_accession: GSM139468///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 1c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-018.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139468/GSM139468.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_KU-OS-021///geo_accession: GSM139469///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-021.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139469/GSM139469.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_KU-OS-022///geo_accession: GSM139470///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: N/A///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: KU-OS-022.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139470/GSM139470.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_UM-OS-02///geo_accession: GSM139471///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 2-3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-02.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139471/GSM139471.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_UM-OS-07///geo_accession: GSM139472///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-07.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139472/GSM139472.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_UM-OS-09///geo_accession: GSM139473///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-09.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139473/GSM139473.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_UM-OS-10///geo_accession: GSM139474///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3///characteristics_ch1.2: grade: 1///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-10.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139474/GSM139474.CEL.gz///data_row_count: 22283 1 title: Ovarian_Tumor_Serous_UM-OS-11///geo_accession: GSM139475///status: Public on Apr 09 2007///submission_date: Oct 10 2006///last_update_date: Apr 09 2007///type: RNA///channel_count: 1///source_name_ch1: Ovarian_Tumor///organism_ch1: Homo sapiens///characteristics_ch1: Tumor_Type: Serous///characteristics_ch1.1: stage: 3c///characteristics_ch1.2: grade: 3///characteristics_ch1.3: B-canenin_nuclear_accumulation: N/A///characteristics_ch1.4: CTNNB1_mutation: N/A///characteristics_ch1.5: APC_mutation: N/A///characteristics_ch1.6: PTEN_mutation: N/A///characteristics_ch1.7: PTEN_immunohistochemistry: N/A///characteristics_ch1.8: KRAS_mutation: N/A///characteristics_ch1.9: PIK3CA_mutation: N/A///characteristics_ch1.10: TP53_mutation: N/A///characteristics_ch1.11: P53_immunohistochemistry: N/A///characteristics_ch1.12: CEL_file_name: UM-OS-11.CEL///molecule_ch1: total RNA///extract_protocol_ch1: Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).///label_ch1: biotin///label_protocol_ch1: 3-5 g of total RNA was processed to produce biotinylated cRNA targets.///taxid_ch1: 9606///hyb_protocol: standard Affymetrix procedures///scan_protocol: standard Affymetrix procedures///description: ovarian tumor: serous///data_processing: Ann Arbor quantile-normalized trimmed-mean method///platform_id: GPL96///contact_name: Rork,,Kuick///contact_email: rork@umich.edu///contact_phone: 734-936-9241///contact_institute: University of Michigan///contact_address: NI8D17, 300 North Ingals Building, U. of Michigan///contact_city: Ann Arbor///contact_state: MI///contact_zip.postal_code: 48109-5473///contact_country: USA///supplementary_file: ftp://ftp.ncbi.nih.gov/pub/geo/DATA/supplementary/samples/GSM139nnn/GSM139475/GSM139475.CEL.gz///data_row_count: 22283 1 (Other) 4 duplicates: GSE6008.GSE6008_GSM139476///GSE6008.GSE6008_GSM139477 1 GSE6008.GSE6008_GSM139476///GSE6008.GSE6008_GSM139478 1 GSE6008.GSE6008_GSM139477///GSE6008.GSE6008_GSM139478 1 NA's 100
An expression set