runDMRcate {MEAL} | R Documentation |
Run DMRcate to a methylation dataset. This function contains all steps of DMRcate analysis, from model.matrix creation to running the analysis.
runDMRcate(set, model, coefficient = 2, resultSet = FALSE, ...)
set |
|
model |
Model matrix or formula to get model matrix from |
coefficient |
Numeric with the column of model matrix used in the analysis. (Default: 2) |
resultSet |
Should results be encapsulated in a |
... |
Further arguments passed to |
runDMRcate is a wrapper for dmrcate
function. runDMRcate
runs all the steps required prior running blockFinder from the methylation set
and the formula of the model. This implementation allows running blockFinder to
other objects than GenomicRatioSet
. The result can be encapsulated in a
ResultSet
to take adavantege of its plotting capabilities.
data.frame or resultSet
with the result of bumphunter