calcMD {MDTS} | R Documentation |
This function will return a matrix of minimum distances where ecah column is a family, and each row is a bin.
calcMD(mCounts, metaData)
mCounts |
A matrix of normalized coverage output by normalizedCounts(). |
metaData |
A table in the format of the output of metaData(). |
A data.frame
of minimum distances. Each column is a trio,
while each row is an entry in bins
load(system.file("extdata", 'bins.RData', package = "MDTS")) load(system.file("extdata", 'counts.RData', package = "MDTS")) load(system.file("extdata", 'pD.RData', package = "MDTS")) mCounts <- normalizeCounts(counts, bins) md <- calcMD(mCounts, pD)