HeatmapView {MAGeCKFlute}R Documentation

Calculate the similarity between samples and plot heatmap

Description

Calculate the similarity between samples and plot heatmap

Usage

HeatmapView(beta, method = "pearson", breaks = NA, cluster_rows = TRUE,
  cluster_cols = TRUE, legend = TRUE, main = NA, fontsize = 10,
  display_numbers = TRUE, filename = NA, width = NA, height = NA, ...)

Arguments

beta

Data frame or matrix, in which each column represents one sample.

method

Character, One of "pearson", "kendall", "spearman", "euclidean", "maximum", "manhattan", "canberra", "binary", or "minkowski".

breaks

The same as that in pheatmap

cluster_rows

The same as that in pheatmap

cluster_cols

The same as that in pheatmap

legend

The same as that in pheatmap

main

The same as that in pheatmap

fontsize

The same as that in pheatmap

display_numbers

The same as that in pheatmap

filename

The same as that in pheatmap

width

The same as that in pheatmap

height

The same as that in pheatmap

...

Other parameters in pheatmap

Value

The same as pheatmap

Author(s)

Wubing Zhang

See Also

pheatmap

Examples

data(MLE_Data)
dd = ReadBeta(MLE_Data, organism="hsa")
dd = dd[,3:ncol(dd)]
HeatmapView(dd, method = "pearson")


[Package MAGeCKFlute version 1.0.1 Index]