HeatmapView {MAGeCKFlute} | R Documentation |
Calculate the similarity between samples and plot heatmap
HeatmapView(beta, method = "pearson", breaks = NA, cluster_rows = TRUE, cluster_cols = TRUE, legend = TRUE, main = NA, fontsize = 10, display_numbers = TRUE, filename = NA, width = NA, height = NA, ...)
beta |
Data frame or matrix, in which each column represents one sample. |
method |
Character, One of "pearson", "kendall", "spearman", "euclidean", "maximum", "manhattan", "canberra", "binary", or "minkowski". |
breaks |
The same as that in pheatmap |
cluster_rows |
The same as that in pheatmap |
cluster_cols |
The same as that in pheatmap |
legend |
The same as that in pheatmap |
main |
The same as that in pheatmap |
fontsize |
The same as that in pheatmap |
display_numbers |
The same as that in pheatmap |
filename |
The same as that in pheatmap |
width |
The same as that in pheatmap |
height |
The same as that in pheatmap |
... |
Other parameters in pheatmap |
The same as pheatmap
Wubing Zhang
data(MLE_Data) dd = ReadBeta(MLE_Data, organism="hsa") dd = dd[,3:ncol(dd)] HeatmapView(dd, method = "pearson")