distalAdj {InPAS}R Documentation

adjust distal CP sites by cleanUpdTSeq

Description

adjust distal CP sites by cleanUpdTSeq

Usage

distalAdj(distalCPs, classifier, classifier_cutoff, shift_range, genome, step=1)

Arguments

distalCPs

the output of searchDistalCPs

classifier

cleanUpdTSeq classifier

classifier_cutoff

cutoff value of the classiffier

shift_range

the searching range for the better CP sites

genome

a BSgenome object

step

adjust step, default 1, means adjust by each base by cleanUpdTSeq.

Value

a list could be input of searchProximalCPs

Author(s)

Jianhong Ou

See Also

searchDistalCPs, PAscore2


[Package InPAS version 1.12.0 Index]