PAscore {InPAS} | R Documentation |
calculate the CP score by PWM
PAscore(seqname, pos, str, idx, PWM, genome, ups = 50, dws = 50)
seqname |
sequence names |
pos |
genomic positions |
str |
strands |
idx |
offset postion |
PWM |
polyA position weight matrix |
genome |
an object of BSgenome |
ups |
upstream base |
dws |
downstream base |
idx list after filter
Jianhong Ou