get.regions.coverage {InPAS}R Documentation

claculate coverage for giving region

Description

claculate coverage for giving region

Usage

get.regions.coverage(chr, utr3.regions.chr, 
                                 hugeData, coverage, phmm=FALSE)

Arguments

chr

chromosome

utr3.regions.chr

the GRanges of region to be extracted

hugeData

is it a huge dataset?

coverage

output of coverageFromBedGraph

phmm

prepare data for singleSample analysis?

Value

GRanges with coverage data

Author(s)

Jianhong Ou


[Package InPAS version 1.12.0 Index]