searchDistalCPs {InPAS} | R Documentation |
search distal CP sites
searchDistalCPs(chr.cov.merge, conn_next_utr3, curr_UTR, window_size, depth.weight, long_coverage_threshold, background, z2s)
chr.cov.merge |
coverage of current chromosome |
conn_next_utr3 |
joint to next 3UTR or not (used for removeUTR3__UTR3) |
curr_UTR |
GRanges of current 3UTR |
window_size |
window size |
depth.weight |
output of depthWeight |
long_coverage_threshold |
cutoff value for coverage of long form 3UTR |
background |
local background range |
z2s |
cut off background scores. see zScoreThrethold |
a list
Jianhong Ou