getIdMap.Annotation {IdMappingRetrieval} | R Documentation |
Get an IdMap object using the data retrieved by a particular service represented by annotation object.
## S3 method for class 'Annotation' getIdMap(this, arrayType="menu", primaryKey=NULL, secondaryKey=NULL, force=FALSE, graphics=TRUE, verbose=FALSE, ...)
arrayType |
A |
primaryKey |
The name which will be assigned to the IdMap object primary column at the end of a data retrieval process. |
secondaryKey |
The name which will be assigned to the IdMap object secondary column at the end of a data retrieval process. |
force |
If |
graphics |
If |
verbose |
|
... |
Additional parameters. |
An ID Map object
Alex Lisovich, Roger Day
For more information see Annotation
.
## Not run: Annotation$init(); Annotation$setCredentials("Affymetrix",user="alex.lisovich@gmail.com",password="125438",verbose); #create Affymetrix annotation object annObj=AnnotationAffx(); #retrieve the ID Map idMap<-getIdMap(annObj,arrayType="HG-U133_Plus_2",primaryKey="Affy",secondaryKey="Uniprot",verbose=TRUE); ## End(Not run)