compareSteady {INSPEcT} | R Documentation |
Generate an object of class INSPEcT_diffsteady from two objects of class INSPEcT
This method compares two object of class INSPEcT in order to identify differential usage of synthesis, processing or degradation rates in two different steady-state conditions. The two INSPEcT objects must have been profiled with replicates in order to provide a statistical significance to the differences between their rates.
compareSteady(inspectIds1, inspectIds2) ## S4 method for signature 'INSPEcT,INSPEcT' compareSteady(inspectIds1, inspectIds2)
inspectIds1 |
An object of calss INSPEcT |
inspectIds2 |
A second object of calss INSPEcT |
An object of class INSPEcT_diffsteady which contains both the absolute
quantification of the rates as well as the comparison with the statistcal significance
associated for each gene and rate. (See INSPEcT_diffsteady-class
)
## load data data('simRates', package='INSPEcT') data('simData3rep', package='INSPEcT') ## generate a new data set with 3 replicate to make the comparison newTpts <- c(0, 1/6) simData3rep_2 <- makeSimDataset(simRates, newTpts, 3, seed=2) ## compare diffrates <- compareSteady(simData3rep, simData3rep_2) ## visualize results diffrates