sfPlot {INSPEcT} | R Documentation |
A nice plot to see scaling factors used for RNA-seq and 4sU-seq libraries
This method generates a plot that immediately shows the scaling factors used to scale RNA- and 4sU-seq libraries and the possible relations between them. The ratio between the RNA- and the 4sU-seq scaling can be in fact considered as a yield of the synthesis within the cells.
sfPlot(object) ## S4 method for signature 'INSPEcT' sfPlot(object)
object |
An object of class INSPEcT |
None
data('rpkms', package='INSPEcT') tpts <- c(0, 1/6, 1/3, 1/2, 1, 2, 4, 8, 16) tL <- 1/6 mycerIds <- newINSPEcT(tpts, tL, rpkms$foursu_exons, rpkms$total_exons, rpkms$foursu_introns, rpkms$total_introns, BPPARAM=SerialParam()) sfPlot(mycerIds)