ratesFirstGuess {INSPEcT} | R Documentation |
Retrieve pre-modeling rates and concentrations
This method allow to access to the estimated synthesis, degradation, processing rates and pre mRNA and total mRNA
concentrations the way they were calculated by the constructor function newINSPEcT
.
ratesFirstGuess(object, feature) ## S4 method for signature 'INSPEcT' ratesFirstGuess(object, feature)
object |
An object of class INSPEcT |
feature |
A character indicating the feature to retireve, "synthesis", "degradation", "processing" for rates, "total" for total mRNA concentrations or "preMRNA" for premature mRNA concentrations |
A numeric matrix containing the values for the selected feature
newINSPEcT
, ratesFirstGuessVar
data('rpkms', package='INSPEcT') tpts <- c(0, 1/6, 1/3, 1/2, 1, 2, 4, 8, 16) tL <- 1/6 mycerIds <- newINSPEcT(tpts, tL, rpkms$foursu_exons, rpkms$total_exons, rpkms$foursu_introns, rpkms$total_introns, BPPARAM=SerialParam()) # get estimated synthesis rates ratesFirstGuess(mycerIds, 'synthesis')