getVariantCalls {GoogleGenomics} | R Documentation |
Elaborate the result of getVariants as a VRanges with all calls for all samples
getVariantCalls(variantSetId = "10473108253681171589", chromosome = "22", start = 16051400, end = 16051500, fields = NULL, converter = c, oneBasedCoord = TRUE, nullAction = "stop")
variantSetId |
The dataset ID. |
chromosome |
The chromosome. |
start |
Start position on the chromosome in 0-based coordinates. |
end |
End position on the chromosome in 0-based coordinates. |
fields |
A subset of fields to retrieve. The default (NULL) will return all fields. |
converter |
A function that takes a list of variant R objects and returns them converted to the desired type. |
oneBasedCoord |
Convert returned addresses to 1-based address system |
nullAction |
either |
By default, the return value is a VRanges object. If a converter is passed, object(s) of the type returned by the converter will be returned by this function.
## Not run: getVariantCalls() ## End(Not run)