variantsToVRanges {GoogleGenomics} | R Documentation |
Note that the Global Alliance for Genomics and Health API uses a 0-based coordinate system. For more detail, please see GA4GH discussions such as the following:
variantsToVRanges(variants, oneBasedCoord = TRUE, slStyle = "UCSC")
variants |
A list of R objects corresponding to the JSON objects returned by the Google Genomics Variants API. |
oneBasedCoord |
Convert genomic positions to 1-based coordinates. |
slStyle |
The style for seqnames (chrN or N or...). Default is UCSC. |
Other variants converter functions: variantsToGRanges
# Authenticated on package load from the env variable GOOGLE_API_KEY. variants1 <- getVariants(converter=variantsToVRanges) summary(variants1) variants2 <- variantsToVRanges(getVariants()) print(identical(variants1, variants2))