Summary,GenomicTiles-method {GenoGAM} | R Documentation |
Computing metrics on each tile of the GenomicTiles
object.
So far all metrics from the Summary generics group, as well as
mean, var, sd, median, mad and IQR are supported.
## S4 method for signature 'GenomicTiles' Summary(x, ..., na.rm = FALSE) ## S4 method for signature 'GenomicTiles' mean(x) ## S4 method for signature 'GenomicTiles,ANY' var(x) ## S4 method for signature 'GenomicTiles' sd(x) ## S4 method for signature 'GenomicTiles' median(x) ## S4 method for signature 'GenomicTiles' mad(x) ## S4 method for signature 'GenomicTiles' IQR(x)
x |
A |
... |
Additional arguments |
na.rm |
Should NAs be dropped. Otherwise the result is NA |
A list of as many elements as there are assays. Each element contains of a matrix with the specified metric computed per tile per column of the assay data.
Georg Stricker georg.stricker@in.tum.de
gt <- makeTestGenomicTiles() sum(gt) min(gt) max(gt) mean(gt) var(gt) sd(gt) median(gt) mad(gt) IQR(gt)