getIndexCoordinates {GenoGAM}R Documentation

Compute the row coordinates for a given index

Description

Given an index of genomic positions, this method computes the corresponding row positions in the assay

Usage

getIndexCoordinates(object, ...)

## S4 method for signature 'GenomicTiles'
getIndexCoordinates(object, id = NULL,
  index = NULL)

Arguments

object

A /codeGenomicTiles object.

...

Additional arguments Usually the original index or the chunk index.

id

A vector if tile ids. By default the complete index is returned.

index

A /codeGranges object representing an index of genomic positions.

Value

A /codeGRanges object of row coordinates

Author(s)

Georg Stricker georg.stricker@in.tum.de

Examples

gt <- makeTestGenomicTiles()
getIndexCoordinates(gt)

[Package GenoGAM version 1.8.0 Index]