qualityCheck {GenoGAM}R Documentation

A function to quality check the data

Description

This function checks some data attributes in the given class. Check details for more information.

Usage

qualityCheck(object, ...)

Arguments

object

Any object for which this methods is implemented

...

further parameters. See details.

Details

So far this method is only implemented for the class GenoGAMDataSet. In this case some general metrics are printed and some plots are stored in the folder "qc", which will be created in the working directory.

Additional parameters: factorGroups (for GenoGAMDataSet), which is used to specify factor groups for normalization plots. By default the groups will be identified automatically. See ?computeSizeFactors for parameter description.

Value

Based on the object provided, see details.

Author(s)

Georg Stricker georg.stricker@in.tum.de


[Package GenoGAM version 1.8.0 Index]