Summary,GenomicTiles-method {GenoGAM}R Documentation

Computing metrics

Description

Computing metrics on each tile of the GenomicTiles object. So far all metrics from the Summary generics group, as well as mean, var, sd, median, mad and IQR are supported.

Usage

## S4 method for signature 'GenomicTiles'
Summary(x, ..., na.rm = FALSE)

## S4 method for signature 'GenomicTiles'
mean(x)

## S4 method for signature 'GenomicTiles,ANY'
var(x)

## S4 method for signature 'GenomicTiles'
sd(x)

## S4 method for signature 'GenomicTiles'
median(x)

## S4 method for signature 'GenomicTiles'
mad(x)

## S4 method for signature 'GenomicTiles'
IQR(x)

Arguments

x

A GenomicTiles object

...

Additional arguments

na.rm

Should NAs be dropped. Otherwise the result is NA

Value

A list of as many elements as there are assays. Each element contains of a matrix with the specified metric computed per tile per column of the assay data.

Author(s)

Georg Stricker georg.stricker@in.tum.de

Examples

gt <- makeTestGenomicTiles()
sum(gt)
min(gt)
max(gt)
mean(gt)
var(gt)
sd(gt)
median(gt)
mad(gt)
IQR(gt)

[Package GenoGAM version 1.8.0 Index]