getGenomeSize {GeneOverlap} | R Documentation |
The genome.size slot contains the number of genes in the genome as an integer.
## S4 method for signature 'GeneOverlap' getGenomeSize(object) ## S4 replacement method for signature 'GeneOverlap' setGenomeSize(object) <- value
object |
A GeneOverlap object. |
value |
An integer representing genomic background. |
After setGenomeSize function is called, the tested Boolean label will be reset to false.
An integer representing the genome size.
data(GeneOverlap) go.obj <- newGeneOverlap(hESC.ChIPSeq.list$H3K27me3, hESC.RNASeq.list$"Exp Medium", genome.size=gs.RNASeq) getGenomeSize(go.obj) v.gs <- c(12e3, 14e3, 16e3, 18e3, 20e3) setNames(sapply(v.gs, function(g) { setGenomeSize(go.obj) <- g go.obj <- testGeneOverlap(go.obj) getPval(go.obj) }), v.gs)