CopyNumberBreakPointGenes-class {GeneBreak}R Documentation

An S4 class to represent a CopyNumberBreakPointGenes object

Description

An S4 class to represent a CopyNumberBreakPointGenes object

Slots

geneAnnotation

A data.frame with original gene annotation input

geneData

A data.frame with gene information added by package methods

featuresPerGene

A list with the associated features per gene

breakpointsPerGene

A matrix with breakage status per gene

Accessors

Methods

Author(s)

E. van den Broek and S. van Lieshout

Examples

data( copynumber.data.chr20 )
data( ens.gene.ann.hg18 )
bp <- getBreakpoints( copynumber.data.chr20 )
bp <- bpFilter( bp )
bp <- addGeneAnnotation( bp, ens.gene.ann.hg18 )
bp <- bpGenes( bp )
bp <- bpStats( bp )
bpPlot( bp, c(20) )

[Package GeneBreak version 1.10.0 Index]