import_txdb {DominoEffect}R Documentation

Imports txdb data and converts it into format required for DominoEffect package

Description

This function imports txdb data and converts into a data frame used in the DominoEffect package only extracting the required information from the txdb object.

Usage

  import_txdb(txdb_object)

Arguments

txdb_object

TxDB Object, e.g. from makeTxDbFromEnsembl

Value

Data frame that can be used in DominoEffect package.

Author(s)

Marija Buljan <buljan@imsb.biol.ethz.ch> Peter Blattmann <blattmann@imsb.biol.ethz.ch>

Examples


#EnsTxDB <- makeTxDbFromEnsembl(organism="Homo sapiens", release=73, 
#   circ_seqs=DEFAULT_CIRC_SEQS,server="ensembldb.ensembl.org")
#DominoData <- import_txdb(EnsTxDB)
#head(DominoData)


[Package DominoEffect version 1.0.0 Index]