GSEA_internal {DOSE} | R Documentation |
generic function for gene set enrichment analysis
GSEA_internal(geneList, exponent, nPerm, minGSSize, maxGSSize, pvalueCutoff, pAdjustMethod, verbose, seed = FALSE, USER_DATA, by = "fgsea")
geneList |
order ranked geneList |
exponent |
weight of each step |
nPerm |
permutation numbers |
minGSSize |
minimal size of each geneSet for analyzing |
maxGSSize |
maximal size of each geneSet for analyzing |
pvalueCutoff |
p value Cutoff |
pAdjustMethod |
p value adjustment method |
verbose |
print message or not |
seed |
set seed inside the function to make result reproducible. FALSE by default. |
USER_DATA |
annotation data |
by |
one of 'fgsea' or 'DOSE' |
gseaResult object
Yu Guangchuang