DEXSeq {DEXSeq} | R Documentation |
This function is a wrapper that calls the necessary functions to perform a differential exon usage test in a single command.
DEXSeq(object, fullModel=design(object), reducedModel = ~ sample + exon, BPPARAM=MulticoreParam(workers=1), fitExpToVar="condition", quiet=TRUE )
object |
An DEXSeqDataSet object. |
fullModel |
The full model formula |
reducedModel |
Null model formula. |
BPPARAM |
A "BiocParallelParam" instance.
See |
fitExpToVar |
A variable name contained in the sample data. The expression values will be fitted to this variable using the the formula " ~ sample + fitExpToVar * exon". |
quiet |
Whether to print messages at each step |
A DEXSeqResults
object.
## Not run: data(pasillaDEXSeqDataSet, package="pasilla") dxr <- DEXSeq( dxd ) ## End(Not run)