runTesting {DChIPRep} | R Documentation |
This function runs the testing on a DChIPRepResults
object. It adds
the FDR calculations and the result table to the DChIPRepResults
object.
## S4 method for signature 'DChIPRepResults' runTesting(object, lfcThreshold = 0.05, plotFDR = FALSE, ...)
object |
A DChIPRepResults object. |
lfcThreshold |
A non-negative threshold value, which determines the null
hypothesis. The null hypothesis is
H_0: |log2(FC)| > |
plotFDR |
If set to TRUE a plot showing the estimated FDRs will be displayed |
... |
not used currently |
a modified DChIPRepResults object containing the testing results
data(testData) dcr <- DChIPRepResults(testData) dcr <- runTesting(dcr)