runTesting {DChIPRep}R Documentation

Run the tests on a DChIPRepResults object.

Description

This function runs the testing on a DChIPRepResults object. It adds the FDR calculations and the result table to the DChIPRepResults object.

Usage

## S4 method for signature 'DChIPRepResults'
runTesting(object, lfcThreshold = 0.05,
  plotFDR = FALSE, ...)

Arguments

object

A DChIPRepResults object.

lfcThreshold

A non-negative threshold value, which determines the null hypothesis. The null hypothesis is H_0: |log2(FC)| > lfcThreshold

plotFDR

If set to TRUE a plot showing the estimated FDRs will be displayed

...

not used currently

Value

a modified DChIPRepResults object containing the testing results

See Also

resultsDChIPRep

Examples

data(testData)
dcr <- DChIPRepResults(testData)
dcr <- runTesting(dcr)

[Package DChIPRep version 1.10.0 Index]