indelLabels {CrispRVariants} | R Documentation |
Makes allele labels for insertion / deletion variants
indelLabels(alns, rc = FALSE, genome.to.pos = NULL, keep.ops = c("I", "D", "N"), regions = NULL, ...)
alns |
(GAligments) aligned reads for finding variants |
rc |
Should the variants be displayed with respect to the negative strand? (Default: FALSE) |
genome.to.pos |
A vector with names being genomic locations and values being positions to use in labels (Default: NULL) |
keep.ops |
CIGAR operations to remain in the variant label (usually indels) |
regions |
IRanges(k) Regions for counting insertions and deletions. Insertions on the right border are not counted. |
... |
extra formatting arguments |
A vector of labels for alns
Helen Lindsay