rcAlns {CrispRVariants}R Documentation

Internal CrispRVariants function for determining read orientation

Description

Function for determining whether reads should be oriented to the target strand, always displayed on the positive strand, or oriented to

Usage

rcAlns(target.strand, orientation)

Arguments

target.strand

The target strand (one of "+","-","*")

orientation

One of "target", "opposite" and "positive" (Default: "target")

Value

A logical value indicating whether reads should be reverse complemented

Author(s)

Helen Lindsay


[Package CrispRVariants version 1.8.0 Index]