getInsertionsTable {CrispRVariants}R Documentation

getInsertionsTable

Description

Returns a table of insertion sequences present in a GAlignments object. This table is aggregated and used by plotAlignments.

Usage

getInsertionsTable(alns, pos = 1L)

Arguments

alns

A GAlignments object

pos

(Integer(1)) The amount by which to shift genomic coordinates upstream to get coordinates relative to a display region

Value

A data frame of insertion sequences, genomic and relative locations

Author(s)

Helen Lindsay


[Package CrispRVariants version 1.8.0 Index]