cellMatchR {CoGAPS} | R Documentation |
cellMatchR
cellMatchR(Atot, nSets, cnt, minNS = NA, maxNS = NA, ignore.NA = FALSE, bySet = FALSE, plotDen = FALSE, ...)
Atot |
a matrix containing the total by set estimates of Pmean output from |
nSets |
number of parallel sets used to generate |
cnt |
number of branches at which to cut dendrogram |
minNS |
minimum of individual set contributions a cluster must contain |
maxNS |
maximum of individual set contributions a cluster must contain |
ignore.NA |
logical indicating whether or not to ignore NAs from potential over dimensionalization. Default is FALSE. |
bySet |
logical indicating whether to return list of matched set solutions from |
plotDen |
plot |
... |
additional parameters for |
a matrix of concensus patterns by samples. If bySet=TRUE
then a list of the set contributions to each
concensus pattern is also returned.