patternMatch4Parallel {CoGAPS} | R Documentation |
patternMatch4Parallel
patternMatch4Parallel(Ptot, nSets, cnt, minNS = NA, maxNS = NULL, cluster.method = "complete", ignore.NA = FALSE, bySet = FALSE, ...)
Ptot |
a matrix containing the total by set estimates of Pmean output
from |
nSets |
number of parallel sets used to generate |
cnt |
number of branches at which to cut dendrogram |
minNS |
minimum of individual set contributions a cluster must contain |
maxNS |
max of individual set contributions a cluster must contain. default is nSets+minNS |
cluster.method |
the agglomeration method to be used for clustering |
ignore.NA |
logical indicating whether or not to ignore NAs from potential over dimensionalization. Default is FALSE. |
bySet |
logical indicating whether to return list of matched set
solutions from |
... |
additional parameters for |
a matrix of concensus patterns by samples. If bySet=TRUE
then
a list of the set contributions to each
concensus pattern is also returned.