patternMatch4Parallel {CoGAPS}R Documentation

patternMatch4Parallel

Description

patternMatch4Parallel

Usage

patternMatch4Parallel(Ptot, nSets, cnt, minNS = NA, maxNS = NULL,
  cluster.method = "complete", ignore.NA = FALSE, bySet = FALSE, ...)

Arguments

Ptot

a matrix containing the total by set estimates of Pmean output from reOrderBySet

nSets

number of parallel sets used to generate Ptot

cnt

number of branches at which to cut dendrogram

minNS

minimum of individual set contributions a cluster must contain

maxNS

max of individual set contributions a cluster must contain. default is nSets+minNS

cluster.method

the agglomeration method to be used for clustering

ignore.NA

logical indicating whether or not to ignore NAs from potential over dimensionalization. Default is FALSE.

bySet

logical indicating whether to return list of matched set solutions from Ptot

...

additional parameters for agnes

Value

a matrix of concensus patterns by samples. If bySet=TRUE then a list of the set contributions to each concensus pattern is also returned.

See Also

agnes


[Package CoGAPS version 3.0.2 Index]