query_ctd_chem {CTDquerier} | R Documentation |
This function cheks for CTDbase gene vocabulary and query CTDbase for each one, downloading chemica-genes interactions, associated diseases, associated KEGG pathways and associated GO terms.
query_ctd_chem(terms, filename = "CTD_chemicals.tsv.gz", mode = "auto", max.distance = 10, verbose = FALSE)
terms |
Character vector with the chemicals used in the query. |
filename |
(default |
mode |
(default |
max.distance |
(default |
verbose |
(default |
An object of class CTDdata
.
rst <- query_ctd_chem( terms = c( "Iron", "Air Pollutants" ), verbose = TRUE )