scores {COMPASS}R Documentation

Fetch the table of scores and metadata from a COMPASSResult Object

Description

This function extracts the functionality and polyfunctionality scores from a COMPASS result merged with the sample metadata table, accounting for any dropped samples due to filtering.

Usage

scores(x, markers = NULL)

Arguments

x

A COMPASSResult object.

markers

A character vector of markers for which to compute the scores. Defaults to all markers. Must match the names returned by markers().

Examples

scores(CR)

[Package COMPASS version 1.18.1 Index]