Variants {BaseSpaceR} | R Documentation |
Manipulating variant data.
getVariantSet(x, ...) getVariants(x, ...)
x |
An object of class |
... |
Adiditional arguments supported by the REST API.
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Coming soon...
These methods return a list with a representation of variant data.
Adrian Alexa
https://developer.basespace.illumina.com/docs/content/documentation/rest-api/api-reference
data(aAuth) ## get the ids of VCF files (within an AppResult? ) reseq <- listAppResults(aAuth, projectId = 21383369, Limit = 1) AppResults(reseq) vcfs <- listFiles(AppResults(reseq), Extensions = ".vcf") Name(vcfs) Id(vcfs) vcfs ## Not run: ## variant metadata getVariantSet(aAuth, vid) ## get the variants getVariants(aAuth, vid, chrom = "chr") v <- getVariants(aAuth, vid, chrom = "chr", EndPos = 1000000L, Limit = 5) v ## End(Not run)