initialize-DetectedAI {AllelicImbalance} | R Documentation |
Functions to construct DetectedAI objects
DetectedAIFromArray(x = "ASEset", strand = "*", reference.frequency = NULL, threshold.frequency = NULL, threshold.count.sample = NULL, threshold.delta.frequency = NULL, threshold.pvalue = NULL, threshold.frequency.names = NULL, threshold.count.sample.names = NULL, threshold.delta.frequency.names = NULL, threshold.pvalue.names = NULL, ...)
x |
|
strand |
set strand to detectAI over "+","-","*" |
reference.frequency |
frequencies of reference alleles based allele counts |
threshold.frequency |
logical array for frequency thresholds |
threshold.count.sample |
logical array for per sample allele count thresholds |
threshold.delta.frequency |
logical array for delta frequency thresholds. |
threshold.pvalue |
logical array for pvalue thresholds (max 1, min 0) |
threshold.frequency.names |
character vector |
threshold.count.sample.names |
character vector |
threshold.delta.frequency.names |
character vector |
threshold.pvalue.names |
character vector |
... |
internal arguments |
produces a class container for reference bias calculations
Jesper R. Gadin, Lasse Folkersen
data(ASEset) a <- ASEset dai <- detectAI(a)