write.bedGraph {ACME} | R Documentation |
Generate bedGraph format files for the UCSC genome browser. This function will write the bedGraph files associated with a aGFFcalc object. There will be either one or two files (default two) representing the raw data and the calculated data (which is output as -log10(val) for visualization purposes for EACH sample).
write.bedGraph(x, raw = TRUE, vals = TRUE, directory = ".")
x |
An ACMESet or ACMECalcSet object |
raw |
Boolean. Create a file for the raw data? |
vals |
Boolean. Create a file for the calculated p-values? |
directory |
Give a directory for storing the files |
Sean Davis
data(example.agff) write.bedGraph(example.agff)