mtbls2

This is the development version of mtbls2; for the stable release version, see mtbls2.

MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)

Bioconductor version: Development (3.22)

Indole-3-acetaldoxime (IAOx) represents an early intermediate of the biosynthesis of a variety of indolic secondary metabolites including the phytoanticipin indol-3-ylmethyl glucosinolate and the phytoalexin camalexin (3-thiazol-2'-yl-indole). Arabidopsis thaliana cyp79B2 cyp79B3 double knockout plants are completely impaired in the conversion of tryptophan to indole-3-acetaldoxime and do not accumulate IAOx-derived metabolites any longer. Consequently, comparative analysis of wild-type and cyp79B2 cyp79B3 plant lines has the potential to explore the complete range of IAOx-derived indolic secondary metabolites.

Author: Steffen Neumann <sneumann at ipb-halle.de>

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Citation (from within R, enter citation("mtbls2")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("mtbls2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

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Details

biocViews	ExperimentData, MassSpectrometryData, RepositoryData
Version	1.39.0
License	CC0
Depends	R (>= 2.10)
Imports
System Requirements
URL	http://www.ebi.ac.uk/metabolights/MTBLS2 https://github.com/sneumann/mtbls2

Suggests	xcms(>= 3.13.8), CAMERA, Risa (>= 1.0.0), knitr, Heatplus, pcaMethods, sp, rmarkdown
Linking To
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Depends On Me
Imports Me
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/mtbls2
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mtbls2
Package Short Url	https://bioconductor.org/packages/mtbls2/
Package Downloads Report	Download Stats