compounds_v1: serialization of compounds info from PharmacoDb v1

compounds_v1

tissues_v1

cell_lines_v1

datasets_v1

CCLE_drts

Format

S4Vectors DataFrame instance

S4Vectors DataFrame instance

S4Vectors DataFrame instance

S4Vectors DataFrame instance

DRTraceSet instance

Source

PharmacoDb Sept 2017

PharmacoDb Sept 2017

PharmacoDb Sept 2017

PharmacoDb Sept 2017

PharmacoDb April 2018

Examples

data(compounds_v1)
head(compounds_v1)
#> DataFrame with 6 rows and 2 columns
#>          id                   name
#>   <numeric>            <character>
#> 1         1      (5Z)-7-Oxozeaenol
#> 2         2 16-beta-bromoandrost..
#> 3         3                 17-AAG
#> 4         4            1S,3R-RSL-3
#> 5         5              3-Cl-AHPC
#> 6         6                 5-FdUR
data(tissues_v1)
head(tissues_v1)
#> DataFrame with 6 rows and 2 columns
#>          id              name
#>   <numeric>       <character>
#> 1         1     adrenal_gland
#> 2         2 autonomic_ganglia
#> 3         3     biliary_tract
#> 4         4             blood
#> 5         5              bone
#> 6         6             brain
data(cell_lines_v1)
head(cell_lines_v1)
#> DataFrame with 6 rows and 2 columns
#>          id        name
#>   <numeric> <character>
#> 1         1       105KC
#> 2         2      1321N1
#> 3         3        143B
#> 4         4       184A1
#> 5         5       184B5
#> 6         6        2004
data(datasets_v1)
head(datasets_v1)
#> DataFrame with 6 rows and 2 columns
#>          id        name
#>   <numeric> <character>
#> 1         1        CCLE
#> 2         5    GDSC1000
#> 3         4        gCSI
#> 4         6        GRAY
#> 5         3        FIMM
#> 6         2      CTRPv2
data(CCLE_drts)
CCLE_drts
#> DRTraceSet for 5 cell lines, drug Irinotecan, dataset CCLE