Package: Rbec
Type: Package
Title: Rbec: a tool for analysis of amplicon sequencing data from
        synthetic microbial communities
Version: 1.18.0
Authors@R: person("Pengfan", "Zhang", email = "pzhang@mpipz.mpg.de", role = c("aut", "cre"))
Description: Rbec is a adapted version of DADA2 for analyzing amplicon
        sequencing data from synthetic communities (SynComs), where the
        reference sequences for each strain exists. Rbec can not only
        accurately profile the microbial compositions in SynComs, but
        also predict the contaminants in SynCom samples.
License: LGPL-3
Imports: Rcpp (>= 1.0.6), dada2, ggplot2, readr, doParallel, foreach,
        grDevices, stats, utils
LinkingTo: Rcpp
RoxygenNote: 7.1.1
biocViews: Sequencing, MicrobialStrain, Microbiome
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Config/pak/sysreqs: make libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:08:40 UTC
RemoteUrl: https://github.com/bioc/Rbec
RemoteRef: RELEASE_3_22
RemoteSha: 1ce88ce1df32aab35b646361ca2693a753d06245
NeedsCompilation: yes
Packaged: 2025-11-14 07:42:37 UTC; root
Author: Pengfan Zhang [aut, cre]
Maintainer: Pengfan Zhang <pzhang@mpipz.mpg.de>
Built: R 4.5.2; x86_64-w64-mingw32; 2025-11-14 07:44:57 UTC; windows
Archs: x64
