Genominator-package | Data backend for Genomic data |
$,ExpData-method | Class "ExpData" |
aggregateExpData | Collapse data into unique entries |
applyMapped | Apply a function over mapped data. |
collapseExpData | Combine multiple data sets |
computeCoverage | Compute effort-coverage values |
ExpData | Class "ExpData" |
ExpData-class | Class "ExpData" |
Genominator | Data backend for Genomic data |
getColnames | Class "ExpData" |
getDB | Class "ExpData" |
getDBName | Class "ExpData" |
getIndexColumns | Class "ExpData" |
getMode | Class "ExpData" |
getRegion | Select a region from an \code{ExpData} object. |
getSchema | Class "ExpData" |
getTablename | Class "ExpData" |
head,ExpData-method | Class "ExpData" |
importFromAlignedReads | Import aligned reads to database |
importToExpData | Import data to database |
initialize,ExpData-method | Class "ExpData" |
joinExpData | Merge ExpData objects |
listTables | Class "ExpData" |
mergeWithAnnotation | Combine data with annotation |
plot.genominator.coverage | Create coverage plot |
plot.genominator.goodness.of.fit | Create goodness-of-fit quantile-quantile plot |
regionGoodnessOfFit | Calculate goodness-of-fit statistics |
regionGoodnessOfFit,data.frame-method | Calculate goodness-of-fit statistics |
regionGoodnessOfFit,ExpData-method | Calculate goodness-of-fit statistics |
regionGoodnessOfFit-methods | Calculate goodness-of-fit statistics |
show,ExpData-method | Class "ExpData" |
splitByAnnotation | Split data into a list by annotation element. |
summarizeByAnnotation | Summarize data based on genome annotation. |
summarizeExpData | Summarize a data column |
[,ExpData-method | Class "ExpData" |